Non-reversible nucleotide substitution models best describe strand-specific nucleotide substitution biases of viral genomes.

In this important work, the authors present a new transformer-based neural network designed to isolate and quantify higher-order epistasis in protein sequences. They provide solid evidence that higher ...

In this tutorial, we demonstrate how to build an advanced yet accessible Bioinformatics AI Agent using Biopython and popular Python libraries, designed to run seamlessly in Google Colab. By combining ...

Abstract: Sequence-to-graph alignment is a critical component of pan-genome-based read alignment and represents the most computationally intensive step in this process. To address this challenge, we ...